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| Dataset Title: | Probability of occurrence 3D map
|
| Institution: | BRTA (Dataset ID: biology__3DFishMaps_812b_bebe_c9b8) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
| Make a graph
|
Attributes {
depth {
String _CoordinateAxisType "Height";
String _CoordinateZisPositive "down";
Int32 actual_range 0, 1000;
String axis "Z";
String ioos_category "Location";
String long_name "Depth";
String positive "down";
String standard_name "depth";
String units "m";
}
aphiaid {
Int32 actual_range 126285, 127427;
String long_name "Life Science Identifier - World Register of Marine Species";
String units "level";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 actual_range -82.875, 89.875;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 actual_range -97.875, 68.375;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
occurrence_probability {
Float64 _FillValue -99999.0;
String long_name "Probability of occurrence of biological entity";
}
NC_GLOBAL {
String acknowledgement "We acknowledge Ocean Biodiversity Information System (OBIS; https://obis.org/) and the Global Biodiversity Information Facility (GBIF; https://www.gbif.org/) for providing fish global occurrences studied here. We also thank to publicly available datasets Copernicus (http://marine.copernicus.eu/services-portfolio/access-to-products/) and the World Ocean Atlas (https://www.ncei.noaa.gov/products/world-ocean-atlas) for providing environmental data";
String cdm_data_type "Grid";
String citation "Valle, M., E. RamÃrez-Romero, L. Ibaibarriaga, L. Citores, J. A. Fernandes-Salvador, and G. Chust. 2024. Pan-Atlantic 3D distribution model incorporating water column for commercial fish. Ecological Modelling 490:110632. https://doi.org/10.1016/j.ecolmodel.2024.110632";
String comment "Uses attributes recommended by https://cfconventions.org";
String Conventions "CF-1.8, COARDS, ACDD-1.3";
String creator_email "mvalle@azti.es";
String creator_institution "AZTI, Marine research, Basque Research and Technology Alliance (BRTA)";
String creator_name "Mireia Valle";
String creator_type "person";
String creator_url "www.azti.es";
String date_created "2024-03-21";
Float64 Easternmost_Easting 68.375;
Float64 geospatial_lat_max 89.875;
Float64 geospatial_lat_min -82.875;
Float64 geospatial_lat_resolution 0.25;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max 68.375;
Float64 geospatial_lon_min -97.875;
Float64 geospatial_lon_resolution 0.25;
String geospatial_lon_units "degrees_east";
String history
"Thu Jun 6 09:19:56 2024: ncpdq -a depth,aphiaid 3Dmaps_all30SPs_geoserver2.nc.orig 3Dmaps_all30SPs_geoserver2.nc
Fri Apr 12 13:33:06 2024: ncatted -a units,aphiaid,c,c,level 3Dmaps_all30SPs_geoserver.nc
Fri Apr 12 13:32:37 2024: ncks -C -x -v string80 3Dmaps_all30SPs_geoserver.nc 3Dmaps_all30SPs_geoserver.nc
Fri Apr 12 13:32:30 2024: ncks -C -x -v taxon_name,taxon_lsid 3Dmaps_all30SPs_geoserver.nc 3Dmaps_all30SPs_geoserver.nc
https://github.com/missionatlantic/3D_SDMs_AtlanticFish
2025-10-28T03:00:40Z (local files)
2025-10-28T03:00:40Z https://erddap.emodnet.eu/erddap/griddap/biology__3DFishMaps_812b_bebe_c9b8.das";
String infoUrl "www.azti.es";
String institution "BRTA";
String keywords "aphiaid, biological, brta, data, depth, entity, map, occurrence, occurrence_probability, probability";
String license "CC-BY";
String naming_authority "emodnet-biology.eu";
String NCO "netCDF Operators version 5.0.6 (Homepage = http://nco.sf.net, Code = https://github.com/nco/nco)";
Float64 Northernmost_Northing 89.875;
String project "MISSION ATLANTIC project-European Union’s Horizon 2020 research and innovation programme under grant agreements No 862428";
String publisher_email "bio@emodnet.eu";
String publisher_institution "Flanders Marine Institute (VLIZ)";
String publisher_name "EMODnet Biology Data Management Team";
String publisher_type "group";
String publisher_url "www.emodnet-biology.eu";
String source "https://github.com/missionatlantic/3D_SDMs_AtlanticFish";
String sourceUrl "(local files)";
Float64 Southernmost_Northing -82.875;
String standard_name_vocabulary "CF Standard Name Table v70";
String summary "3-D habitat suitability maps (HSMS) or probability of occurrence maps for main commercial fish species, built using Shape-Constrained Generalized Additive Models (SC-GAMs)";
String title "Probability of occurrence 3D map";
Float64 Westernmost_Easting -97.875;
}
}
Data Access Protocol (DAP) and its
projection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
griddap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/griddap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/griddap/jplMURSST41.htmlTable?analysed_sst[(2002-06-01T09:00:00Z)][(-89.99):1000:(89.99)][(-179.99):1000:(180.0)]
Thus, the query is often a data variable name (e.g., analysed_sst),
followed by [(start):stride:(stop)]
(or a shorter variation of that) for each of the variable's dimensions
(for example, [time][latitude][longitude]).
For details, see the griddap Documentation.